mount sinai
Multi-Task Learning for Extracting Menstrual Characteristics from Clinical Notes
Shopova, Anna, Lippert, Cristoph, Shaw, Leslee J., Alleva, Eugenia
Menstrual health is a critical yet often overlooked aspect of women's healthcare. Despite its clinical relevance, detailed data on menstrual characteristics is rarely available in structured medical records. To address this gap, we propose a novel Natural Language Processing pipeline to extract key menstrual cycle attributes -- dysmenorrhea, regularity, flow volume, and intermenstrual bleeding. Our approach utilizes the GatorTron model with Multi-Task Prompt-based Learning, enhanced by a hybrid retrieval preprocessing step to identify relevant text segments. It out- performs baseline methods, achieving an average F1-score of 90% across all menstrual characteristics, despite being trained on fewer than 100 annotated clinical notes. The retrieval step consistently improves performance across all approaches, allowing the model to focus on the most relevant segments of lengthy clinical notes. These results show that combining multi-task learning with retrieval improves generalization and performance across menstrual charac- teristics, advancing automated extraction from clinical notes and supporting women's health research.
- Europe > Germany > Brandenburg > Potsdam (0.04)
- North America > United States > Florida > Miami-Dade County > Miami (0.04)
- North America > United States > District of Columbia > Washington (0.04)
- Health & Medicine > Therapeutic Area (1.00)
- Health & Medicine > Health Care Technology > Medical Record (1.00)
Generative Large Language Models are autonomous practitioners of evidence-based medicine
Vaid, Akhil, Lampert, Joshua, Lee, Juhee, Sawant, Ashwin, Apakama, Donald, Sakhuja, Ankit, Soroush, Ali, Lee, Denise, Landi, Isotta, Bussola, Nicole, Nabeel, Ismail, Freeman, Robbie, Kovatch, Patricia, Carr, Brendan, Glicksberg, Benjamin, Argulian, Edgar, Lerakis, Stamatios, Kraft, Monica, Charney, Alexander, Nadkarni, Girish
Background: Evidence-based medicine (EBM) is fundamental to modern clinical practice, requiring clinicians to continually update their knowledge and apply the best clinical evidence in patient care. The practice of EBM faces challenges due to rapid advancements in medical research, leading to information overload for clinicians. The integration of artificial intelligence (AI), specifically Generative Large Language Models (LLMs), offers a promising solution towards managing this complexity. Methods: This study involved the curation of real-world clinical cases across various specialties, converting them into .json files for analysis. LLMs, including proprietary models like ChatGPT 3.5 and 4, Gemini Pro, and open-source models like LLaMA v2 and Mixtral-8x7B, were employed. These models were equipped with tools to retrieve information from case files and make clinical decisions similar to how clinicians must operate in the real world. Model performance was evaluated based on correctness of final answer, judicious use of tools, conformity to guidelines, and resistance to hallucinations. Results: GPT-4 was most capable of autonomous operation in a clinical setting, being generally more effective in ordering relevant investigations and conforming to clinical guidelines. Limitations were observed in terms of model ability to handle complex guidelines and diagnostic nuances. Retrieval Augmented Generation made recommendations more tailored to patients and healthcare systems. Conclusions: LLMs can be made to function as autonomous practitioners of evidence-based medicine. Their ability to utilize tooling can be harnessed to interact with the infrastructure of a real-world healthcare system and perform the tasks of patient management in a guideline directed manner. Prompt engineering may help to further enhance this potential and transform healthcare for the clinician and the patient.
- North America > United States > New York > New York County > New York City (0.07)
- North America > United States > Massachusetts > Suffolk County > Boston (0.04)
- North America > United States > California > Santa Clara County > Santa Clara (0.04)
HeartBEiT: Vision Transformer for Electrocardiogram Data Improves Diagnostic Performance at Low Sample Sizes
Vaid, Akhil, Jiang, Joy, Sawant, Ashwin, Lerakis, Stamatios, Argulian, Edgar, Ahuja, Yuri, Lampert, Joshua, Charney, Alexander, Greenspan, Hayit, Glicksberg, Benjamin, Narula, Jagat, Nadkarni, Girish
The electrocardiogram (ECG) is a ubiquitous diagnostic modality. Convolutional neural networks (CNNs) applied towards ECG analysis require large sample sizes, and transfer learning approaches result in suboptimal performance when pre-training is done on natural images. We leveraged masked image modeling to create the first vision-based transformer model, HeartBEiT, for electrocardiogram waveform analysis. We pre-trained this model on 8.5 million ECGs and then compared performance vs. standard CNN architectures for diagnosis of hypertrophic cardiomyopathy, low left ventricular ejection fraction and ST elevation myocardial infarction using differing training sample sizes and independent validation datasets. We show that HeartBEiT has significantly higher performance at lower sample sizes compared to other models. Finally, we also show that HeartBEiT improves explainability of diagnosis by highlighting biologically relevant regions of the EKG vs. standard CNNs. Thus, we present the first vision-based waveform transformer that can be used to develop specialized models for ECG analysis especially at low sample sizes.
- North America > United States > New York > New York County > New York City (0.16)
- Asia > Middle East > Israel > Tel Aviv District > Tel Aviv (0.04)
AI Used to Determine Cause of Alzheimer's and Related Disorders
Novel artificial intelligence methods have revealed unexpected microscopic abnormalities that can predict cognitive impairment, according to a study led by researchers at Mount Sinai. These findings were published in the journal Acta Neuropathologica Communications this week. "AI represents an entirely new paradigm for studying dementia and will have a transformative effect on research into complex brain diseases, especially Alzheimer's disease," said co-corresponding author John Crary, MD, PhD, Professor of Pathology, Molecular and Cell-Based Medicine, Neuroscience, and Artificial Intelligence and Human Health, at the Icahn School of Medicine at Mount Sinai. He added that, "The deep learning approach was applied to the prediction of cognitive impairment, a challenging problem for which no current human-performed histopathologic diagnostic tool exists." The Mount Sinai team identified and analyzed the underlying architecture and cellular features of two regions in the brain, the medial temporal lobe and frontal cortex.
- North America > United States > Texas > Bexar County > San Antonio (0.06)
- Europe > United Kingdom (0.06)
AI can detect signs of lung-clogging blot clots in electrocardiograms, shows study
Pulmonary embolisms are dangerous, lung-clogging blot clots. In a pilot study, scientists at the Icahn School of Medicine at Mount Sinai showed for the first time that artificial intelligence (AI) algorithms can detect signs of these clots in electrocardiograms (EKGs), a finding which may one day help doctors with screening. The results published in the European Heart Journal – Digital Health suggested that new machine learning algorithms, which are designed to exploit a combination of EKG and electronic health record (EHR) data, may be more effective than currently used screening tests at determining whether moderate- to high-risk patients actually have pulmonary embolisms. The study was led by Sulaiman S. Somani, MD, a former medical student in the lab of Benjamin S. Glicksberg, PhD, Assistant Professor of Genetics and Genomic Sciences and a member of the Hasso Plattner Institute for Digital Health at Mount Sinai. Pulmonary embolisms happen when deep vein blood clots, usually formed in the legs or arms, break away and clog lung arteries. These clots can be lethal or cause long-term lung damage.
AI Moves Into Homes and Hospitals
Use of artificial intelligence (AI) by hospitals is now hitting its stride after a long ramp-up as more systems and facilities sink serious dollars and effort into connected healthcare. Funded in part by a $20 million grant from the National Institute on Aging (NIA), MassAITC's stated mission is to advance in-home connected care as "90% of older Americans would prefer to stay in their homes as they age," but with Alzheimer's presenting daunting challenges. "While at-home health care technologies hold significant promise, they have not been specifically developed for older adults or Alzheimer's patients, caregivers and their clinicians. Further, many current treatment and intervention regimes are limited in terms of their ability to be remotely delivered, managed and adapted to patient needs and caregiver abilities." Adapting to consumers' developing digital health preferences is becoming a prime differentiator for providers.
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- North America > United States > Massachusetts > Hampshire County > Amherst (0.05)
- Europe > United Kingdom (0.05)
- Africa (0.05)
Mount Sinai Launches First-Ever Dept. of Artificial Intelligence and Human Health
The Department of Artificial Intelligence and Human Health mission is to lead the artificial intelligence-driven transformation of health care through innovative research, apply that knowledge to treatment in hospital and clinical settings, and provide personalized care for each patient, which will expand Mount Sinai's impact on human health across the Health System and around the world. This effort will include creating a hub-and-satellite model to make new tools and techniques available to all Mount Sinai physicians and building an infrastructure for high-performance computing and data access to improve Mount Sinai's diagnostic and treatment capabilities. The Department of AI and Human Health is also launching a campaign to recruit talented researchers, scientists, physicians, and students in the field. MSDW data goes back to 2003, covering a variety of EMR and ancillary systems at The Mount Sinai Hospital and expanding to Mount Sinai Queens, and in recent years, Mount Sinai Morningside, Mount Sinai West, and Mount Sinai Brooklyn hospitals. The MSDW team offers a list of data services to access custom data sets, custom data marts, and de-identified data.
This AI tech may spot unseen signs of heart failure - YesPunjab.com
New York, Oct 19, 2021- US researchers have developed an electrocardiogram-reading algorithm that can detect subtle signs of heart failure. Heart failure, or congestive heart failure, occurs when the heart pumps less blood than the body normally needs. For years, doctors have relied heavily on an imaging technique called an echocardiogram to assess whether a patient may be experiencing heart failure. While helpful, echocardiograms can be labour-intensive procedures that are only offered at select hospitals. In the study, the researchers at Mount Sinai described the development of an artificial intelligence (AI)-based computer algorithm that not only assessed the strength of the left ventricle but also the right ventricle, which takes deoxygenated blood streaming in from the body and pumps it to the lungs.
Mount Sinai puts machine learning to work for quality and safety
Robbie Freeman, vice president of clinical innovation at New York's Mount Sinai Health System began his career working at the bedside, so he has an intimate appreciation of the real-world value of patient safety projects – and importance of ensuring key data is gathered and made actionable with optimal workflows."I'm In an earlier, pre-digital age, many of the flow sheets and assessments collected during a nursing assessment, or other clinical information entered into the chart, might not have been "used or even necessarily looked at," he said. But in recent years, "they've become very valuable in the world of predictive analytics. There's a lot of information in those flow sheets that we can tap into for these models."
Mount Sinai puts machine learning to work for quality and safety
Robbie Freeman, vice president of clinical innovation at New York's Mount Sinai Health System began his career working at the bedside, so he has an intimate appreciation of the real-world value of patient safety projects – and importance of ensuring key data is gathered and made actionable with optimal workflows. "I'm a registered nurse, and I think working with patients and spending a lot of time on data entry is what kind of led us to this real focus on clinical workflows and delivering additional value," said Freeman, speaking Wednesday at the HIMSS Machine Learning & AI for Healthcare Digital Summit about some of Mount Sinai's recent automation initiatives. In an earlier, pre-digital age, many of the flow sheets and assessments collected during a nursing assessment, or other clinical information entered into the chart, might not have been "used or even necessarily looked at," he said. But in recent years, "they've become very valuable in the world of predictive analytics. There's a lot of information in those flow sheets that we can tap into for these models."